| Visualize sender and receiver random effects | ab_plot |
| Additive-effects plot for an ame_als fit | ab_plot.ame_als |
| AddHealth community 3 data | addhealthc3 |
| AddHealth community 9 data | addhealthc9 |
| Penalised ALS time-varying coefficient estimate | als_dynamic_beta |
| Convert an ALS fit to MCMC starting values | als_start_vals |
| AME model fitting routine | ame |
| Fast (MCMC-free) AME estimation for a cross-sectional network | ame_als |
| Bootstrap uncertainty for the fast AME estimator | ame_als_bootstrap boot_ame |
| Refit a fast AME model with a warm start | ame_als_refit |
| Display memory usage information for AME models | ame_memory_settings |
| Calculate memory usage of AME model components | ame_memory_usage |
| AME model fitting options | ame_options |
| Run AME model with multiple parallel chains | ame_parallel |
| Convert array to list. | array_to_list |
| Generic dispatcher for posterior::as_draws on lame fits | as_draws |
| Convert an AME / LAME fit to a posterior draws object | as_draws.ame as_draws.ame_als as_draws.lame |
| Convert a graph object to a lame-ready adjacency matrix | as_lame_y |
| autoplot method for ALS fits | autoplot.ame_als autoplot.lame_als |
| Ribbon plot of time-varying coefficients (or coefplot for static fits) | autoplot.ame autoplot.lame |
| fitted/residuals are not defined for a bootstrap object | boot_ame-no-fitted fitted.boot_ame residuals.boot_ame |
| Validate input data format for lame function | check_format |
| Extract beta path from a penalised-ALS object | coef.als_dynamic_beta |
| Extract model coefficients from AME model | coef.ame coef.lame |
| Extract coefficients from a fast AME fit | coef.ame_als |
| Point estimates from a fast AME bootstrap | coef.boot_ame |
| Cold War data | coldwar |
| Combine multiple AME chains | combine_ame_chains |
| Optimize AME model output for memory efficiency | compact_ame |
| Compute MCMC convergence diagnostics for multiple chains | compute_mcmc_diagnostics |
| Compute X'X and X'y for bipartite covariate regression | compute_XtX_Xty_bip_cpp |
| Comtrade data | comtrade |
| Bayesian credible intervals for AME model parameters | confint.ame confint.lame |
| Confidence intervals for a fast AME fit | confint.ame_als |
| Confidence intervals from a fast AME bootstrap | confint.boot_ame |
| Computes the design socioarray of covariate values | design_array_listwisedel |
| Detect potential change points in a dynamic_beta posterior path | detect_change_point |
| Dutch college data | dutchcollege |
| Summarise the implied prior on a time-varying coefficient path | dynamic_beta_prior_summary |
| Edgelist to sociomatrix | el2sm |
| Held-out predictive evaluation for an ame / lame fit | evaluate_heldout |
| Extract fitted values from AME model | fitted.ame |
| Extract fitted values from a fast AME fit | fitted.ame_als |
| Extract fitted values from LAME model | fitted.lame |
| Probability-integral-transform calibration check for h-step forecasts | forecast_pit |
| formula() is not defined for an ame() / lame() fit | formula.ame formula.lame |
| Create design array for replicate data | get_design_rep |
| Compute EZ when beta is time-varying | get_EZ_dynamic_beta_cpp |
| Get fitted object from MCMC results | get_fit_object |
| Get fitted object from MCMC results | get_start_vals |
| S3 generic for 'glance' | glance |
| Glance method for fitted 'ame' / 'lame' objects | glance.ame glance.lame |
| Glance method for fitted 'ame_als' / 'lame_als' objects | glance.ame_als glance.lame_als |
| Compute GOF statistics from saved posterior samples | gof |
| Visualize goodness-of-fit statistics for AME and LAME models | gof_plot |
| Goodness-of-fit check for an ame_als fit | gof_plot.ame_als |
| Goodness of fit statistics | gof_stats |
| Goodness of fit statistics for bipartite networks | gof_stats_bipartite |
| Goodness of fit statistics for unipartite networks | gof_stats_unipartite |
| Posterior-predictive temporal-trend test | gof_temporal |
| Initialize dynamic additive effects with AR(1) structure | init_dynamic_ab_cpp |
| Initialize dynamic latent positions with AR(1) structure | init_dynamic_positions |
| International relations in the 90s | IR90s |
| AME model fitting routine for longitudinal relational data | lame |
| Fast (MCMC-free) AME estimation for a longitudinal network | lame_als |
| Multi-panel lame() with shared coefficients | lame_multi |
| Run LAME (longitudinal AME) with multiple parallel chains | lame_parallel |
| Resume a 'lame()' MCMC run from a checkpoint | lame_resume |
| Fast approximate dynamic snap-shift AME estimator | lame_snap_als |
| Extract latent positions as a tidy data frame | latent_positions latent_positions.ame latent_positions.ame_als latent_positions.lame |
| Lazega's law firm data | lazegalaw |
| Exact rolling-origin leave-future-out cross-validation | lfo |
| Convert list to array | list_to_array |
| Log-likelihood is not directly exposed for ame() / lame() fits | logLik.ame logLik.lame |
| Log-likelihood is not defined for a fast AME fit | logLik.ame_als |
| Generic dispatcher for loo / waic on ame / lame fits | loo waic |
| Approximate leave-one-out cross-validation for AME / LAME fits | loo.ame loo.ame_als loo.lame |
| Symmetric square root of a matrix | mhalf |
| Number of observed dyads in an AME / LAME fit | nobs.ame nobs.lame |
| Number of observed dyads in an ame_als fit | nobs.ame_als |
| ERGM-style covariate helpers for ame() / lame() | absdiff nodefactor nodematch |
| Post-MCMC per-actor time-varying slopes | per_actor_slopes |
| Simple diagnostic plot for AME model fit | plot.ame |
| Plot the convergence of a fast AME fit | plot.ame_als |
| Plot diagnostics for a LAME model fit | plot.lame |
| Options for saving posterior samples during MCMC | posterior_options |
| Extract posterior quantiles for model components | posterior_quantiles |
| Predict method for AME models | predict.ame |
| Predictions from a fast AME fit | predict.ame_als |
| Predict method for LAME models | predict.lame |
| Long-format draws of the linear predictor for marginaleffects-style use | prediction_draws_long |
| Print method for penalised ALS time-varying beta | print.als_dynamic_beta |
| Print method for AME model objects | print.ame |
| Print an ame_als object | print.ame_als |
| Print methods for AME and LAME simulation objects | print.ame.sim print.lame.sim |
| Print bootstrap results for a fast AME fit | print.boot_ame |
| Print method for gof_temporal output | print.gof_temporal |
| Print method for LAME objects | print.lame |
| Print method for lame_multi | print.lame_multi |
| Print method for lfo() results | print.lfo_lame |
| Print method for per_actor_slopes | print.per_actor_slopes |
| Print method for summary.ame objects | print.summary.ame |
| Print a fast AME summary | print.summary.ame_als |
| Print method for summary.lame objects | print.summary.lame |
| Print the priors used by an AME / LAME / ame_als fit | prior_summary prior_summary.ame prior_summary.ame_als prior_summary.default prior_summary.lame |
| Procrustes alignment of latent positions across time | procrustes_align |
| Full bipartite Gibbs update for beta, a, b | rbeta_ab_bip_gibbs_cpp |
| Read the per-iteration log-lik matrix back from on-disk chunks | read_log_lik |
| Reconstruct EZ and UVPM matrices from AME model output | reconstruct_EZ reconstruct_UVPM |
| Extract residuals from AME model | residuals.ame |
| Residuals from a fast AME fit | residuals.ame_als |
| Extract residuals from LAME model | residuals.lame |
| Multivariate split-R-hat for dynamic_beta coefficient paths | rhat_dynamic_beta |
| Simulation from a multivariate normal distribution | rmvnorm |
| Gibbs update for additive effects covariance | rSab_fc |
| Bipartite dynamic UV Gibbs update | rUV_dynamic_bip_fc_cpp |
| Gibbs sampling of dynamic U and V with AR(1) evolution | rUV_dynamic_fc |
| Update dynamic latent positions using AR(1) process | rUV_dynamic_fc_cpp |
| Gibbs sampling of dynamic U and V with snap-shift dynamics | rUV_dynamic_snap_fc |
| Update dynamic latent positions with snap-shift model selection | rUV_dynamic_snap_fc_cpp |
| Gibbs sampling of dynamic U and V with heavy-tailed (Student-t) innovations | rUV_dynamic_t_fc |
| Update dynamic latent positions with heavy-tailed (Student-t) AR(1) innovations | rUV_dynamic_t_fc_cpp |
| Gibbs sampling of U and V | rUV_sym_fc |
| Batch binary Z sampling across all time periods (bipartite, rho=0) | rZ_bin_bip_batch_cpp |
| Batch normal Z sampling across all time periods | rZ_nrm_batch_cpp |
| Simulate missing values in a normal AME model | rZ_nrm_fc |
| Gibbs update for latent variable in a Poisson AME model | rZ_pois_fc |
| Sample the dynamic-block beta path via FFBS | sample_beta_dynamic_cpp |
| Sample the static-block beta conditional on the dynamic path | sample_beta_static_cpp |
| Sample dynamic additive effects with AR(1) evolution | sample_dynamic_ab_cpp |
| Sample AR(1) parameter for dynamic additive effects | sample_rho_ab_cpp |
| Sample the AR(1) rho for each dynamic block | sample_rho_beta_cpp |
| Sample AR(1) parameter for dynamic latent factors | sample_rho_uv |
| Sample innovation variance for dynamic additive effects | sample_sigma_ab_cpp |
| Sample the AR(1) innovation sigma for each dynamic block | sample_sigma_beta_cpp |
| Sample innovation variance for dynamic latent factors | sample_sigma_uv |
| Describe the estimator behind a fitted object | sampler_describe sampler_describe.ame sampler_describe.ame_als sampler_describe.boot_ame sampler_describe.lame |
| Sampson's monastery data | sampsonmonks |
| Sheep dominance data | sheep |
| Simulate posterior distributions from fitted AME model | simulate_posterior |
| Simulate networks from a fitted AME model | simulate.ame |
| Simulate networks from a fitted ame_als model | simulate.ame_als |
| Simulate longitudinal networks from a fitted LAME model | simulate.lame |
| Simulate a Poisson relational matrix | simY_pois |
| Summarize snap indices by actor category | snap_category_summary |
| Extract posterior draws of snap indices | snap_index_draws |
| Summarize posterior snap indices | snap_index_summary |
| Summarize posterior rank uncertainty for snap years | snap_rank_summary |
| Summary of an AME object | summary.ame |
| Summarize an ame_als object | summary.ame_als |
| Summary method for AME simulations | summary.ame.sim |
| Summarize bootstrap results for a fast AME fit | print.summary.boot_ame summary.boot_ame |
| Summary of a LAME object | summary.lame |
| Summary method for LAME simulations | summary.lame.sim |
| S3 generic for 'tidy' | tidy |
| Tidy method for fitted 'ame' / 'lame' objects | tidy.ame tidy.lame |
| Tidy method for fitted 'ame_als' / 'lame_als' objects | tidy.ame_als tidy.lame_als |
| Tidy method for a standalone bootstrap object ('boot_ame') | tidy.boot_ame |
| MCMC trace plots and density plots for AME/LAME model parameters | trace_plot |
| Update an AME / LAME fit | update.ame update.lame |
| Update an 'ame_als' / 'lame_als' fit | update.ame_als update.lame_als |
| Visualize multiplicative effects (latent factors) from AME models | uv_plot |
| Posterior covariance of AME model coefficients | vcov.ame vcov.lame |
| Sandwich covariance for the regression coefficients of a fast AME fit | vcov.ame_als |
| Bootstrap covariance of the regression coefficients | vcov.boot_ame |
| TIES sanctions data for vignettes | vignette_data |
| WAIC for AME / LAME fits | waic.ame waic.ame_als waic.lame |
| Linear combinations of submatrices of an array | Xbeta |
| Compute Xbeta product for bipartite networks | Xbeta_bip_cpp |
| Column covariates | Xcol |
| Dyadic covariates | Xdyad |
| Row covariates | Xrow |
| Relational matrix | Y |
| binary relational data and covariates | YX_bin |
| Synthetic longitudinal binary relational data, list-form (latent-scale) | YX_bin_list |
| synthetic longitudinal binary relational data (latent-scale) | YX_bin_long |
| Censored binary nomination data and covariates | YX_cbin |
| Fixed rank nomination data and covariates | YX_frn |
| normal relational data and covariates | YX_nrm |
| ordinal relational data and covariates | YX_ord |